Occasionally when doing incremental build work, I will get a failure message during to do_configure step when using autotool.bbclass in the recipe. The failure message indicates a failure to copy an .m4 file from the sysroot. What I believe is happening is during the copy of the .m4 files from the sysroot to wherever they will be used by the autoconf program, the sysroot is being updated by another parallel task. This update is either removing and adding/modifying new files which causes the problem.
Fixed in master: http://git.yoctoproject.org/cgit.cgi/poky/commit/?id=a92ff3ad4212f8966bbd3f6defcb112737d81cda
Verified with commit fb53d69d9c726e6a663ea276cc440676e20f8326